Publications

Accurate Detection of Tandem Repeats from Error-Prone Sequences with EquiRep [paper] [code]
Zhezheng Song^*, Tasfia Zahin^*, Xiang Li, Mingfu Shao
Genome Research 2025

Accurate Detection of Tandem Repeats from Error-Prone Sequences with EquiRep [paper] [preprint] [slide]
Zhezheng Song^*, Tasfia Zahin^*, Xiang Li, Mingfu Shao
Proceedings of 29th International Conference on Research in Computational Molecular Biology (RECOMB 2025)

An alignment-free method for phylogeny estimation using maximum likelihood [paper] [code]
Tasfia Zahin^*, Md Hasin Abrar^*, Mizanur Rahman Jewel, Tahrina Tasnim, Md. Shamsuzzoha Bayzid, Atif Rahman
BMC Bioinformatics 2025

Accurate Assembly of Circular RNAs with TERRACE [paper] [code]
Tasfia Zahin, Qian Shi^*, Carl Zang^*, Mingfu Shao
Genome Research 2024

Accurate Assembly of Circular RNAs with TERRACE [paper] [preprint] [slide]
Tasfia Zahin, Qian Shi^*, Carl Zang^*, Mingfu Shao
Proceedings of 28th International Conference on Research in Computational Molecular Biology (RECOMB 2024)